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| Name |
| Beltrão, Pedro |
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| Nationality |
| Portuguese |
| E-Mail |
| pedrobeltrao@gmail.com |
|
| 1st Degree |
| Biochemistry |
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| University (1st Degree) |
| Universidade de Coimbra |
|
| About the PhD |
| Field of Research |
| bioinformatics, evolution, systems biology |
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| Thesis Title |
| Computational Tools for the Study of Cellular Networks |
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| Supervisor(s) |
| Luis Serrano |
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| Co-Supervisor(s) |
| Manuel Santos |
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| University |
| Aveiro, Portugal |
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| Laboratory |
| Serrano Lab, EMBL |
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| City |
| Heidelberg |
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| Country |
| Germany |
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| Date of Thesis Defence |
| 2007-09-21 |
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| After the PhD (Current Situation) |
| Position |
| Postdoc (Lim lab and Krogan lab) |
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| Project |
| Evolution of signaling pathways in fungi |
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| Institution |
| UCSF |
|
| City |
| San Francisco |
|
| Country |
| USA |
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| Relevant Publications |
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| Studer RA, Rodriguez-Mias RA, Haas KM, Hsu JI, Viéitez C, Solé C, Swaney DL, Stanford LB, Liachko I, Böttcher R, Dunham MJ, de Nadal E, Posas F, Beltrao P, Villén J. Evolution of protein phosphorylation across 18 fungal species. Science. 2016 Oct 14;354(6309):229-232. |
| View Publication |
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| Ochoa D, Jonikas M, Lawrence RT, El Debs B, Selkrig J, Typas A, Villén J, Santos SDM, Beltrao P. An atlas of human kinase regulation Mol Sys Bio 2016 12, 888 |
| View Publication |
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| Gonçalves E, Fragoulis A, Garcia-Alonso L, Cramer T, Saez-Rodriguez J, Beltrao P Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in Cancer. Cell Systems 2017 |
| View Publication |
| Publications |
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| Fernandez-Ballester G, Beltrao P, Gonzalez JM, Song YH, Wilmanns M, Valencia A, Serrano L. “Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions” J Mol Biol. 2009 May 15;388(4):902-16. Epub 2009 Mar 24 |
| View Publication |
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| Beltrao P, Trinidad JC, Fiedler D, Roguev A, Lim WA, Shokat KM, Burlingame AL, Krogan NJ “Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species” PLoS Biol. 2009 Jun 16;7(6):e1000134 |
| View Publication |
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| Encinar JA, Fernandez-Ballester G, Sánchez IE, Hurtado-Gomez E, Stricher F, Beltrao P, Serrano L. “ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs” Bioinformatics. 2009 Sep 15;25(18):2418-24 |
| View Publication |
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| Beltrao P, Cagney C, Krogan NJ “Quantitative Genetic Interactions Reveal Layers of Biological Modularity” Cell. 2010 May 28;141(5):739-45 |
| View Publication |
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| Lefebvre C, Rajbhandari P, Alvarez MJ, Bandaru P, Lim WK, Sato M, Wang K, Sumazin P, Kustagi M, Bisikirska BC, Basso K, Beltrao P, Krogan N, Gautier J, Dalla-Favera R, Califano A. “A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers” Mol Syst Biol. 2010 Jun 8;6:377 |
| View Publication |
[more publications]
| More Publications |
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| Kapitzky L, Beltrao P, Berens TJ, Gassner N, Zhou C, Wüster A, Wu J, Babu M,Elledge SJ,Toczyski D,Lokey RS, Krogan NJ “Cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action” Mol Syst Biol., 2010 Dec 21;6:451 |
| View Publication |
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| Nichols RJ, Sen S, Choo YJ, Beltrao P, Zietek M, Chaba R, Lee S, Kazmierczak K, Lee K, Wong A, Shales M, Lovett S, Winkler M, Krogan NJ, Typas A, Gross CA “Phenotypic Landscape of a Bacterial Cell” Cell, 2011 Jan 7;144(1):143-56 |
| View Publication |
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| Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame AL, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ Systematic Functional Prioritization of Protein Post-translational Modifications 2012 Cell 150 (2), 413-425 |
| View Publication |
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| Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, Villén J. Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation. Nat Methods. 2013 Jul;10(7):676-82 |
| View Publication |
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| Beltrao P, Bork P, Krogan NJ, van Noort V. Evolution and functional cross-talk of protein post-translational modifications. Mol Syst Biol. 2013 Dec 22;9:714. |
| View Publication |
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| Johnson JR, Santos SD, Johnson T, Pieper U, Strumillo M, Wagih O, Sali A, Krogan NJ, Beltrao P Prediction of functionally important phospho-regulatory events in Xenopus laevis oocytes PLOS Comput Biol 11(8): e1004362. |
| View Publication |
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| Martin H, Shales M, Fernandez‐Piñar P, Wei P, Molina M, Fiedler M, Shokat KM, Beltrao P, Lim W, Krogan NJ Differential genetic interactions of yeast stress response MAPK pathways Mol Syst Biol. 2015 11: 800 |
| View Publication |
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| Wagih O, Sugiyama N, Ishihama Y, Beltrao P. Uncovering Phosphorylation-Based Specificities through Functional Interaction Networks. Mol Cell Proteomics. 2016 Jan;15(1):236-45. |
| View Publication |
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| Massey SE, Moura G, Beltrão P, Almeida R, Garey JR, Tuite MF, Santos MA. Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. Genome Res. 2003 Apr;13(4):544-57. |
| View Publication |
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| Beltrao P, Serrano L. Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions. PLoS Comput Biol. 2005 Aug;1(3):e26. Epub 2005 Aug 12. |
| View Publication |
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| Beltrao P, Serrano L.Specificity and evolvability in eukaryotic protein interaction networks. PLoS Comput Biol. 2007 Feb 16;3(2):e25. Epub 2006 Dec 28. |
| View Publication |
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| Kiel C, Foglierini M, Kuemmerer N, Beltrao P, Serrano L. A genome-wide Ras-effector interaction network. J Mol Biol. 2007 Jul 27;370(5):1020-32. Epub 2007 May 22. |
| View Publication |
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| Beltrao P, Kiel C, Serrano L.Structures in systems biology. Curr Opin Struct Biol. 2007 Jun;17(3):378-84. Epub 2007 Jun 15 |
| View Publication |
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| Sánchez IE, Beltrao P, Stricher F, Schymkowitz J, Ferkinghoff-Borg J, Rousseau F, Serrano L.Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm. PLoS Comput Biol. 2008 Apr 4;4(4):e1000052. |
| View Publication |
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| Isalan M, Lemerle C, Michalodimitrakis K, Horn C, Beltrao P, Raineri E, Garriga-Canut M, Serrano L.Evolvability and hierarchy in rewired bacterial gene networks. Nature. 2008 Apr 17;452(7189):840-5. |
| View Publication |
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Ander M, Beltrao P, Di Ventura B, Ferkinghoff-Borg J, Foglierini M, Kaplan A, Lemerle C, Tomás-Oliveira I, Serrano L.
Abstract SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks. Syst Biol (Stevenage). 2004 Jun;1(1):129-38. |
| View Publication |
| Last Update |
| 2017-10-13 12:36:07 |
| The responsibility for this page contents is entirely of the student/alumnus. |
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Program financially supported by
the National Foundation for
Science and Technology
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