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Publications

Students - Recent Publications
Zhu Y*, Sousa AMM*, Gao T*, Skarica M*, Li M*, Santpere G, Esteller-Cucala P, Juan D, Ferrandez-Peral L, Golden FO, Yang M, Miller DJ, Marques-Bonet T, Kawasawa YI, Zhao H, Sestan N (2018) Spatiotemporal transcriptomic divergence across human and macaque brain development. Science 362, eaat8077. * Equal contribution
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Li M*, Santpere G*, Kawasawa YI*, Evgrafov OV*, Gulden FO*, Pochareddy S*, Sunkin SM*, Li Z*, Shin Y*, Zhu Y, Sousa AMM, Kitchen RR, Werling DM, Kang HJ, Pletikos M, Choi J, Muchnik S, Xu X, Wang D, Liu S, Giusti-Rodríguez P, Leeuw CA, Pardiñas AF, BrainSpan Consortium, PsychENCODE Consortium: Developmental Subgroup, Hu M, Jin F, Li Y, Owen MJ, O'Donovan MC, Walters JT, Posthuma D, Sullivan PF, Levitt P, Weinberger1 DR, Kleinman JE, Geschwind DH, Sanders S, Hawrylycz MJ, Gerstein MB, Lein ES, Knowles JA, Sestan N (2018) Integrative functional genomic analysis of human brain development and neuropsychiatric risk. Science, 362, eaat7615. * Equal contribution
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Amiri A*, Coppola G*, Scuderi S*, Wu F*, Roychowdhury T*, Liu F, Pochareddy S, Shin Y, Safi A, Song L, Zhu Y, Sousa AMM, The PsychENCODE Consortium, Gerstein M, Crawford GE, Sestan N, Abyzov A, Vaccarino FM (2018) The transcriptome and epigenome landscape of human cortical development modeled in brain organoids. Science 362, eaat6720. * Equal contribution
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Tebbenkamp ATN, Varela L, Choi J, Paredes MI, Giani AM, Song JE, Sestan-Pesa M, Franjic D, Sousa AMM, Liu ZW, Li M, Bichsel C, Koch M, Szigeti-Buck K, Liu F, Li Z, Kawasawa YI, Paspalas CD, Mineur YS, Prontera P, Merla G, Picciotto MR, Arnsten AFT, Horvath TL, Sestan N (2018) The 7q11.23 protein DNAJC30 interacts with ATP synthase and links mitochondria to brain development. Cell 18, 31186-31193.
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Sin O, Mata-Cabana A, Seinstra RI, Nollen EAA. Filter Retardation Assay for Detecting and Quantifying Polyglutamine Aggregates Using Caenorhabditis elegans Lysates. Bio-protocol. 2018 8(19): e3042. DOI: 10.21769/BioProtoc.3042
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Mata-Cabana A, Sin O, Seinstra RI, Nollen EAA. Nuclear/cytoplasmic Fractionation of Proteins from Caenorhabditis elegans. Bio-protocol. 2018 Bio-protocol 8(20): e3053. DOI: 10.21769/BioProtoc.3053
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Rode S, Ohm H, Anhäuser L, Wagner M, Rosing M, Deng X, Sin O, Leidel SA, Storkebaum E, Rentmeister A, Zhu S, Rumpf S. Differential Requirement for Translation Initiation Factor Pathways During Ecdysone-Dependent Neuronal Remodeling in the Drosophila PNS. Cell Reports. 2018 24:2287–2299
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Rapino F, Delaunay S, Rambow F, Zhou Z, Tharun L, De Tullio P, Sin O, Shostak K, Schmitz S, Piepers J, Ghesquière B, Karim L, Charloteaux B, Jamart D, Florin A, Lambert C, Rorive A, Jerusalem G, Leucci E, Dewaele M, Vooijs M, Leidel SA, Georges M, Voz M, Peers B, Büttner R, Marine JC, Chariot A, Close P. Codon-specific translation reprogramming promotes resistance to targeted therapy. Nature. 2018 558(7711):605-609.
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Pinto-Almeida A, Mendes T, Ferreira P, Belo S, Anibal FF, Allegretti SM, Carrilho E, Afonso A. (2018) Comparative Proteomics Reveals Characteristic Proteins on Praziquantel-resistance in Schistosoma mansoni. bioRxiv 314724; doi: https://doi.org/10.1101/314724
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The interplay of leukemia cells and the bone marrow microenvironment. Duarte D, Hawkins ED, Lo Celso C. Blood. 2018 Apr 5;131(14):1507-1511.
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Staff - Recent Publications
Pinto PAB, Henriques T, Freitas MO, Martins T, Domingues RG, Wyrzykowska PS, Coelho PA, Carmo AM, Sunkel CE, Proudfoot NJ, Moreira A (2011) RNA polymerase II kinetics in polo polyadenylation signal selection. EMBO J. in press.
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Fernandes RA, Yu C, Carmo AM, Evans EJ, van der Merwe PA, Davis SJ (2010) What controls T cell receptor phosphorylation? Cell 142:668-669.
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Gonçalves CM, Castro MAA, Henriques T, Oliveira MI, Pinheiro HC, Oliveira C, Sreenu VB, Evans EJ, Davis SJ, Moreira A, Carmo AM (2009) Molecular cloning and analysis of SSc5D, a new member of the scavenger receptor cysteine-rich superfamily. Mol. Immunol. 46:2585-2596.
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Coelho PA, Queiroz-Machado J, Carmo AM, Moutinho-Pereira S, Maiato H, Sunkel CE (2008) Dual role of Topoisomerase II in centromere resolution and Aurora B activity. PLoS Biol. 6:1758-1777.
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Nunes RJ, Castro MAA, Gonçalves C, Bamberger M, Pereira CF, Bismuth G, Carmo AM (2008) Protein interactions between CD2 and Lck are required for the lipid raft distribution of CD2. J. Immunol. 180:988-997.
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Carneiro F, Oliveira C, Suriano G, Seruca R: Molecular pathology of familial gastric cancer, with an emphasis on Hereditary Diffuse Gastric Cancer (HDGC).

J Clin Pathol 61:25-30, 2008. DOI:10.1136jcp.2006.043679.
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Nunes RJ, Castro MAA, Gonçalves CM, Bamberger M, Pereira CF, Bismuth G, Carmo AM (2008) Protein interactions between CD2 and Lck are required for the lipid raft distribution of CD2. J. Immunol. 180:988-997.
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Kearney A, Avramovic A, Castro MAA, Carmo AM, Davis SJ, van der Merwe PA (2007) CD2 binding to CD58 is accompanied by energetically significant conformational adjustments and is accelerated by electrostatic interactions. J. Biol. Chem. 282:13160-13166.
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Kearney A, Avramovic A, Castro MAA, Carmo AM, Davis SJ, van der Merwe PA (2007) CD2 binding to CD58 is accompanied by energetically significant conformational adjustments and is accelerated by electrostatic interactions. J. Biol. Chem. 282:13160-13166.
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Castro MAA, Oliveira MI, Nunes RJ, Fabre S, Peixoto A, Brown MH, Parnes JR, Bismuth G, Moreira A, Rocha B, Carmo AM (2007) Extracellular isoforms of CD6 generated by alternative splicing regulate targeting of CD6 to the immunological synapse. J. Immunol. 178:4351-4361.
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INSTITUTIONS INVOLVED
Program financially supported by
the National Foundation for
Science and Technology