|
|
Name |
Pereira, Carlos Filipe |
|
Nationality |
Portuguse |
E-Mail |
filipe.pereira@mssm.edu |
|
1st Degree |
Biology |
|
University (1st Degree) |
Faculty of Sciences University of Porto |
|
About the PhD |
Field of Research |
Stem Cells & Epigenetics |
|
Thesis Title |
Epigenetic events underlying somatic cell reprogramming |
|
Abstract |
Although differentiated cells normally retain cell-type-specific gene expression patterns throughout their lifetime, cell identity can sometimes be modified or reversed in vivo by transdifferentiation, or experimentally through... |
more |
Although differentiated cells normally retain cell-type-specific gene expression patterns throughout their lifetime, cell identity can sometimes be modified or reversed in vivo by transdifferentiation, or experimentally through cell fusion or by nuclear transfer. Several studies have illustrated the importance of chromatin remodelling, DNA demethylation and dominant transcriptional factor expression for changes in lineage identity. Here the epigenetic mechanisms required to “reset” genome function were investigated using experimental heterokaryons.
To examine the epigenetic changes that are required for the dominant conversion of lymphocytes to muscle, I generated stable heterokaryons between human B-lymphocytes and mouse C2C12 myotubes. I show that lymphocyte nuclei adopt an architecture resembling that of muscle and initiate the expression of muscle-specific genes in the same temporal order as developing muscle. The establishment of this novel gene expression program is coordinated with the shutdown of several lymphocyte-associated genes. Interestingly, inhibition of histone deacetylase (HDAC) activity during reprogramming selectively blocks the silencing of lymphocyte-specific genes but does not prevent the establishment of muscle-specific gene expression.
In order to reprogram somatic cells to pluripotency, I fused human B-lymphocytes and mouse embryonic stem (ES) cells. The conversion of human cells is initiated rapidly, occurring in heterokaryons before nuclear fusion. Reprogramming of human lymphocytes by mouse ES cells elicits the expression of a human ES-specific gene expression profile in which endogenous hSSEA4, hFgf receptors and ligands are expressed while factors that are characteristic of mouse ES cells, such as Bmp4 and Lif receptor are not. Using genetically engineered mouse ES cells I demonstrate that successful reprogramming requires the expression of Oct4, but importantly, does not require Sox2, a factor implicated as critical for the induction of pluripotency. Following reprogramming, mOct4 becomes dispensable for maintaining the multi-potent state of hybrid cells. Finally, I have examined the reprogramming potential of embryonic germ (EG), embryonic carcinoma (EC) and ES cells deficient for the Polycomb repressive complex 2 (PRC2) proteins Eed, Suz12 and Ezh2. While EC and EG cells share the ability to reprogram human lymphocytes with ES cells, the lack of Polycomb proteins abolishes reprogramming. Thus, the repressive chromatin mark (H3K27 methylation) catalysed by PRC2 play a crucial role in keeping ES cells with full reprogramming capacity. Collectively my results underscore the importance of chromatin events during cell fate reprogramming. |
close |
|
|
Supervisor(s) |
Amanda G. Fisher |
|
University |
Imperial College of London |
|
Laboratory |
Lymphocyte development group, MRC Clinical sciences centre |
|
City |
London |
|
Country |
UK |
|
Date of Thesis Defence |
2008-12-15 |
|
After the PhD (Current Situation) |
Position |
Postdoctoral researcher |
|
Project |
Programming hematopoietic stem cells for cell replacement therapy |
|
Institution |
Mount Sinai School of medicine |
View Institution website |
|
City |
New York |
|
Country |
USA |
|
|
Relevant Publications |
|
Pereira CF, Piccolo FM, Tsubouchi T, Sauer S, Ryan NK, Bruno L, Landeira D, Santos J, Banito A, Gil J, Koseki H, Merkenschlager M, Fisher AG.ESCs require PRC2 to direct the successful reprogramming of differentiated cells toward pluripotency.
Cell Stem Cell. 2010 Jun 4;6(6):547-56.
|
View Publication |
|
Pereira, C.F. *, Chang, B., Qiu, J., Niu, X., Papatsenko, D., Hendry, C.E., Clark, N.R., Nomura-Kitabayashi A., Kovacic J.C., Ma’ayan A., Schaniel C., Lemischka, I.R., Moore, K.A* (2013). Induction of a Hemogenic Program in Mouse Fibroblasts. Cell Stem Cell. 13, 205-18. *corresponding authors. |
View Publication |
|
Terranova, R., Pereira, C. F., Du Roure, C., Merkenschlager, M., and Fisher, A. G. (2006). Acquisition and extinction of gene expression programs are separable events in heterokaryon reprogramming. J Cell Sci 119, 2065-2072. |
View Publication |
|
Pereira, C.F., Terranova, R., Ryan, N.K., Santos, J., Morris, K.M., Cui, W., Merkenschlager, M., Fisher, A.G. (2008). Heterokaryon-based reprogramming of human B lymphocytes for pluripotency requires Oct4 but not Sox2. PLoS Genet 4, e1000170. |
View Publication |
|
Pereira, C.F., Fisher, A.G. (2009) Heterokaryon-based reprogramming for pluripotency. Curr. Protoc. Stem Cell Biol. Chapter 4:Unit 4B.1. |
View Publication |
|
Banito A, Rashid ST, Acosta JC, Li S, Pereira CF, Geti I, Pinho S, Silva JC, Azuara V, Walsh M, Vallier L, Gil J. Senescence impairs successful reprogramming to pluripotent stem cells. Genes Dev. 2009 Sep 15;23(18):2134-9. Epub 2009 Aug 20. |
View Publication |
|
Savarese F, Dávila A, Nechanitzky R, De La Rosa-Velazquez I, Pereira CF, Engelke R, Takahashi K, Jenuwein T, Kohwi-Shigematsu T, Fisher AG, Grosschedl R. Satb1 and Satb2 regulate embryonic stem cell differentiation and Nanog expression. Genes Dev. 2009 Nov 15;23(22):2625-38. |
View Publication |
Publications |
|
Jorgensen, H.F., Terry, A., Beretta, C., Pereira, C.F., Leleu, M., Chen,Z.F., Kelly, C., Merkenschlager, M., Fisher, A.G. (2009). REST selectively represses a subset of RE1-containing neuronal genes in mouse embryonic stem cells. Development. 136, 715-721. |
View Publication |
|
Correia, M.P., Cardoso, E.M., Pereira, C.F., Neves, R., Uhrberg, M., Arosa, F.A. (2009). Hepatocytes and IL-15: a favorable microenvironment for T cell survival and CD8+ T cell differentiation. J Immunol. 182, 6149-59. |
View Publication |
Last Update |
2014-04-10 19:16:36 |
The responsibility for this page contents is entirely of the student/alumnus. |
|
 |
|
 |
|
 |
|
 |
|
 |
|
 |
|
Program financially supported by
the National Foundation for
Science and Technology
|
|
 |
|